PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 294aa    MW: 32262.8 Da    PI: 6.8877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
   XP_016506260.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfaavlRSRSNVDLKDKWRNL 56
                     79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948163IPR017930Myb domain
SuperFamilySSF466894.93E-16258IPR009057Homeodomain-like
SMARTSM007172.9E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-14556IPR009057Homeodomain-like
PfamPF002492.5E-8556IPR001005SANT/Myb domain
CDDcd116604.40E-21656No hitNo description
SMARTSM005263.5E-9118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.749120188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-14120193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-13123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAAV LRSRSNVDLK DKWRNLHVMA  60
NGLGSRHQGR VVSKSVQPKQ RRDDNSLLVS TAVENDIEVL DPKPLASSGD ALEDVGCEKP  120
ICRLDDLILE AIAKLKEPHG SRRNAILSYI EEWYTAPPNF ERLLAANLKV LTDKGRLIKV  180
RHQYRIAPSR LSSGTKGGHL PFLMDGKEDS TMIEKNEIRI RTKAQVDVEL EQMKSMTAEE  240
AAAAAAQAVA DAEAAIAEAE RAARIAEAAE AEAEAAQCFH EVTLKALQHQ TIPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506260.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506327.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506387.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506453.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506515.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-68TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0V0IBG01e-133A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-69telomere repeat binding factor 1